The wires are heating along their entire length as they would with excessive current. Has anyone else checked the wires beween the alternator and the rectifier/regulator harness for high temps?
I started and ran the NT for 3 minutes to check Reg/Rect & wiring temps.
-My R/R heated from 65F to 82F.
-Wiring from the Alt to R/R (3 yellow) felt about the same temp as R/R.
-DC wiring out of R/R stayed cool.
For your R/R to heat up that fast...... that's some abnormal loading. The only non-stock loads I had running are a FuseBlock Relay, 5Vdc UBS power supply, GPS, and LED topbox lights.
Just some added thoughts. The ECM makes 5VDC for the TPS and MAP sensor, and I would think (not sure) it uses the same 5vdc power supply for the IAT and ECT. I would suspect (not sure) that the 5VDC is filtered and smoothed more than what the 12VDC source is supplied to the ECM. The MAP, ECT, TPS, and IAT all have hi and lo voltage fault codes, but the TPS sensor operates closer to the low volt fault than the other sensors (fault at .3vdc with idle at only .5vdc (I think)). All the others operate at mid range and are most likely less susceptible to cause a lo volt fault. But since you installed an external 5vdc to the MAP and TPS and are still getting the faults it probably isn't your TPS causing the faults. Was your external 5vdc power supply external to the NT's battery and R/R?
-I'd sort out the high temp R/R wiring first.
-Lots of wiring & connectors between the ECM and TPS.....ECM Connector, 10 pin connector near rear throttle body, TPS connector & all wiring.
-The ECM could be failing and the circuit that gives a low (or Hi) TPS volt fault could be failing and causing an erroneous fault code and forcing engine into fail-safe mode.
-Since you are pretty deep into trying to fix this, it may be worthwhile to find out if your TPS faults are Hi or Lo Volt fault. Maybe a Honda dealer would be kind enough to read if for you for something reasonable.